Taking basic research to application: Using light quality to improve herb growth

Coriander has a distinctive flavour and is popular in dishes such as curry. (Image By Deeptimanta (Own work) [CC BY-SA 4.0 (http://creativecommons.org/licenses/by-sa/4.0)], via Wikimedia Commons)

Coriander is the UK’s top-selling culinary herb, an industry worth £18 million a year. However, maintaining high standards of product quality is expensive and can lead to lots of plants being rejected before they make it to supermarket shelves. One of the key objectives for the potted herb industry is the production of compact plants with dark green leaves, but the plants that consumers end up with often do not conform with this ideal and can appear leggy and weak.

Plants compete for light by growing taller

Plants go to extraordinary lengths to maximise their light capture for photosynthesis. When plants grow close together however, they compete for resources and one resource that becomes limited in closely spaced plants is light due to mutual shading.

Shade has a negative impact on a plant’s health as it limits the light that a plant can use for photosynthesis. But unlike animals, which can move to new areas once space, water or food becomes limited, plants are immotile and have evolved unique strategies to compete for and maximise light capture. Chief among these is the shade avoidance syndrome. Incredibly, plants anticipate that they are at risk of being shaded even before they actually are shaded through the detection of local light quality – the depletion of red and blue light and the relative enrichment of longer wavelengths of light due to the absorption and reflection properties of vegetation. The shade avoidance syndrome is triggered in response to this change in light quality and the most dramatic changes in plant form involve the elongation of stems and the raising of leaves so as to move light capturing organs into sunlight.

Elongation does have drawbacks however – resources are diverted away from seed, chlorophyll and leaf production; there is also an increased risk of lodging (where plants fall over due to over-elongation making them unable to support their organs), which puts a limit on how densely we can plant crops before they over-compete with each other and it impacts yields.

UV-B suppresses elongation

On the other hand, plants have mechanisms in place to prevent over-elongation. These are often related to light-quality as well and one such mechanism is the sensing of UV-B wavelengths.

Classical Ultra-Violet research on plants has focused on the damaging effects that this shorter wavelength, higher energy light can have on DNA, or cell structure through production of reactive oxygen species. These UV-B wavelengths are beyond our visible range, but plants have specific photoreceptors that can detect UV-B and trigger a signaling cascade that will lead to the accumulation of sun screening compounds as well as architectural changes. Indeed, it is now clear that the plant responses to UV-B are not only a reaction to UV-B damage, but also a specific response to the sensing of UV-B (read more on this on the UV4Plants society website).

A finding that emerged from our laboratory in Bristol was that the elongation that plants exhibited in crowded conditions could be suppressed with the addition of UV-B to their light conditions (Hayes et al., 2014). UV-B is a component of direct sunlight, so an interpretation of this adaptation is that plants use UV-B as a signal that they are in direct sunlight and hence no longer need to elongate to escape shade.

Applying our research to the glasshouse

Armed with this new knowledge of plant responses to light, we are collaborating with a major potted herb grower to improve their product quality. A problem with glasshouse grown coriander in the winter months is that they grow long and spindly. Often these herbs are planted densely with around 60 seedlings per pot – conditions that are conducive to shade avoidance. Short days and cloud cover during winter further contribute to over-elongation. To compound this, many materials used in glasshouse construction such as glass or clear acrylic filter out UV-B radiation. Thus, plants growing in these conditions are no longer receiving the UV-B brake on elongation that they would be if they were growing outdoors. If we restore this brake by using artificial UV-B light sources then we could solve this problem. We’ve started trialing UV-B treatments this summer and early results look promising. However, we need to wait until winter to collect our most informative data as in summer, with bright and long days, coriander plants grow far more compact than in winter.

Both pots were planted at the same density, the coriander on the left were grown in normal conditions while the coriander on the right were supplemented with UV-B radiation.

Hayes S, Velanis CN, Jenkins GI, Franklin KA. UV-B detected by the UVR8 photoreceptor antagonises auxin signalling and plant shade avoidance. Proc Natl Acad U.S.A. 2014. 111(32):11894-9

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This blog is written by Cabot Institute member Donald Fraser who is a PhD student in the Department of Life Sciences at the University of Bristol, he is studying plant responses to light and the circadian clock.

What happens when you cross a venture capitalist with a major national scientific research organisation?

CSIRO Corporate Headquarters, Campbell. Image credit: Bidgee – Own work, CC BY-SA 3.0

I’m not sure if there’s a punchline, instead just a rather alarming answer. A couple of days ago, over on the other side of the world, Larry Marshall, the chief executive of Australia’s government agency for scientific research, made a disturbing announcement. Australia’s national science agency, CSIRO (the Commonwealth Scientific and Industrial Research Organisation) is to face a further 350 job losses (over 5% of its workforce) over the next two years. Primarily these losses look to be from the Oceans and Atmosphere division, affecting ongoing work on monitoring and predicting the Earth’s climate.

The job losses themselves are a huge blow for Australian and global climate research, and give the impression that the current Australian regime are perhaps not totally committed to upholding their end of the Paris agreement. This doesn’t say much, given that the Australian commitments were widely derided for being pretty weak in the first place.

So why is CSIRO’s current work important? Taking just one example, CSIRO plays a key role in monitoring the current state of the atmosphere, positioned as it is in one of the few countries in the Southern Hemisphere with well-developed scientific infrastructure. The Cape Grim atmospheric monitoring station in Tasmania, has been recording levels of southern hemisphere greenhouse gases for the last 40 years. The station mostly receives air that has travelled over the southern ocean free from pollution sources, thus providing a key record of southern hemisphere background levels of various atmospheric constituents. It’s basically the southern hemisphere equivalent of the Mauna Loa station in Hawaii which is regularly used as the key yardstick for northern hemisphere background levels.

Long term records like this are kind of pretty important, not just for scientific investigation, but also as an aid to public outreach. Anyone could look at these graphs of Cape Grim data for the three most abundant greenhouse gases, and pick up the take home message: they’ve all been increasing since the 1970s.

The point is that the Cape Grim measurements have played a key role in our understanding of the changes in the atmosphere over last 40 years, and should continue to do so into the future. Except maybe they won’t. If reports are to be believed it’s exactly this type of infrastructure that is under threat. Reportedly 100 people are to be unceremoniously thrown out to pasture from the Oceans and Atmosphere division, leaving just 30 left. Such a remarkably high turnover will have an inevitable effect on the quality of continuing work, not to mention quantity.

Perhaps that is what the current government in Australia want though. Less data might create more uncertainty, giving them a justification to do even less about it. But, even that view has previously been countered by the Cabot Institute’s Richard Pancost and Stephan Lewandowsky who explained why more uncertainty is no excuse for doing nothing.

Alternatively, you could take the opinion that maybe it’s not the Australian government’s responsibility to directly fund this sort of research. But, these sort of long-term records require secure long-term funding, the like of which are not found in the competitive world of academia. It’s no good chopping and changing grants every 3 years, funding different universities for different stations. There would be no consistency in the record, and suddenly any increases you see might be more attributable to a change in location than a real-world signal.

Perhaps the most alarming aspect of this is the misleading justification for the cuts, by saying that the question of global climate change has been answered. Sure, there is a consensus that human activities are affecting our climate, but that’s like saying there’s a consensus that it will rain tomorrow. It leaves questions unanswered, such as where and when?

Actually, to make matters worse the CEO added that “after Paris” the question of global climate change had been answered. Hold on, since when was it a group of politicians who were to decide whether large-scale global environmental change was happening or not? And haven’t we known about this for a good deal longer than the last three months?

Ignoring these inaccurate attempts to justify the decision, a better explanation is found in Marshall’s stated goal to make CSIRO more focused on innovation and commercialisation. The problem is, that monitoring the current state of the oceans and atmosphere or predicting its long-term future just isn’t a great commercial venture. It’s the sort of research that takes in a fair bit of funding, but doesn’t seem to offer any immediate financial return. Telling Joe Banker the world will be 2 °C warmer in 100 years isn’t going to cause the stock market to rise or fall.

That seems to contrast with weather prediction, which seems to be a profitable business. A quick look at the UK Met Office financial statements reveals over £220m in revenue in the last financial year. Admittedly most of this is from government contracts (a case of moving money round departments), but over 10% is from commercial revenue, whether that be aviation, or maybe supermarkets wanting to know whether to stock barbecues at the weekend or not. Losing the BBC contract may have been a PR disaster, but financially it was clearly not the worst thing that could have happened.

The point is that weather prediction pays. It’s a short-term prediction that is easily evaluated, allowing people to judge the value for money it gives.

Is there some way we can put a similar value on climate monitoring and prediction? I suspect not, given it would run against scientific principles of openness and be much harder to judge its worth. I imagine Larry Marshall came to the same conclusion, but then that really calls into question whether he’s really pulling his weight at CSIRO. You can’t expect all responsibility to make CSIRO profitable to fall on employees who have no entrepreneurial experience.

If more recent reports are to be believed, this move has come as a shock to even the Australian Prime Minister, and so perhaps there is hope that the news of CSIRO’s climate science death are premature. Even so, funding issues are hardly peculiar to Australia, and the question of whether climate science can fit into modern commercial ideals will inevitably keep cropping up across the globe.

It remains to be seen what exactly will happen but severe cuts to CSIRO’s infrastructure and staff will affect not just Australian science, but have global implications as well. The name Cape Grim has always struck me as being slightly ominous, and aptly (or cruelly) its 40th anniversary celebrations were due to take place later this year. Somehow I can’t imagine there will be too many people in the mood for celebrating right now though.

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This blog has been written by Cabot Institute member Mark Lunt, from the University of Bristol’s Atmospheric Chemistry Research Group.  Mark’s main area of research is in the estimation of greenhouse gas emissions from atmospheric measurements.